Multi-omics

Multi-omics is an approach that combines data from multiple "omics" fields, such as genomics, transcriptomics, proteomics, and metabolomics, to gain a comprehensive understanding of biological systems. By integrating these different layers of information, we can get a more complete picture of how genes, proteins, and other molecules interact and influence each other in health and disease. 

We can think of multi-omics as if we are building a house ...

The blueprint (genome), which dictates the overall structure, is crucial. But just having the blueprint doesn't tell the whole story. Zoning regulations (epigenome) might limit when and where you can build, ultimately influencing the overall design.

Next, construction begins. Follow the blueprint, building materials (transcriptome) are used by workers (proteome), to construct the foundation and walls of the home.

But the house isn't just about the structure. The furnishings (metabolome) inside gives it life and function. Finally, exposures such as the weather (exposome) impact the house's longevity and appearance, affecting how it stands up to the test of time and the conditions it encounters

Genome

Your genome is the entire collection of DNA instructions that helps your body function properly. DNA is made up of long strings of chemicals called nucleotides (A,C,G and T), which are like the letters in a very long book. This book is divided into chapters called genes, and each gene contains the instructions for making a specific part of your body or for controlling how your body works. In our house building analogy, we can think of the genome as the blueprints that describe the overall design and schematic of the home.

To survey the genome, MOHD will use short-read whole genome sequencing (WGS). 

Epigenome

The epigenome is a set of chemical modifications to your DNA that helps regulate which genes are turned on or off in different cells. All the cells in our body have the same genome, but what makes a brain cell (neuron) different from a liver cell (hepatocyte) are differences in the levels and combinations of expressed genes. In our house building analogy, we can think of the epigenome as a set of zoning codes that dictate when and where parts of the house are built.


To survey the epigenome, MOHD will measure chromatin accessibility using ATAC-seq and DNA methylation using whole genome bisulfite sequencing (WGBS). 

Transcriptome

The transcriptome is the set of RNA messages (or transcripts) produced by your cells. These are instructions copied from the genome (DNA) that tell the cell which proteins to make. The transcriptome can change depending on various conditions and signals, helping scientists understand which genes are active and how cells respond to their environment. In our house building analogy, we can think of the transcriptome as the building materials that are used build the walls and foundation of the house.


To survey the transcriptome, MOHD will use short read RNA-seq

Proteome

The proteome is the entire set of proteins produced by our cells. Proteins are the building blocks of the body, doing everything from building tissues to fighting infections. The proteome can change over time and in different conditions, helping scientists understand how our bodies work and respond to various factors. In our house building analogy, we can think of the proteome as the construction workers that carry out all the work of building and maintaining the home.


To survey the proteome, MOHD will measure protein abundance using untargeted, high-throughput mass-spectrometry.

Metabolome

The metabolome is the comprehensive set of chemical compounds, known as metabolites, that include amino acids, lipids, sugars, nucleotides, organic acids, vitamins, and other small molecules. Metabolites are crucial for energy production, cellular structure, signaling, and regulation. The metabolome is highly dynamic and can change rapidly in response to various factors such as environmental conditions, genetic modifications, disease states, and therapeutic interventions. In our house building analogy, we can think of the metabolome as the furnishings that provide the home life and function,


To survey the metabolome, MOHD will measure metabolite abundance using untargeted, high-throughput mass-spectrometry.


Exposome

The exposome refers to all the environmental factors and experiences that a person is exposed to throughout their life. This includes everything from the air we breathe and the food we eat to the stress we face and the chemicals we encounter. Essentially, it's the sum of all the external influences that can affect our health and wellbeing over time. For example some chemicals, such as Per- and polyfluoroalkyl substances (PFAS) can accumulate over time and have been linked to various health issues, including liver damage, thyroid disease, decreased fertility, and increased risk of certain cancers. In our house building analogy, we can think of the exposome as the weather, which can impact the house's longevity and appearance. 


To survey the exposome, MOHD will use high-throughput mass-spectrometry.